Shaw, S. L.*, M. S. Allen. 2014. Localized spatial and temporal variation in reproductive effort of Florida Bass. Transactions of the American Fisheries Society 143:85-96.
Gwinn, D. C.*, M. S. Allen, F. D. Johnston, P. Brown, C. R. Todd, R. Arlinghaus. 2013. Rethinking length-based fisheries regulations: the value of protecting old and large fish with harvest slots. Fish and Fisheries doi: 10.1111/faf.12053.
Hangsleben, M. A.*, M. S. Allen, D. C. Gwinn. 2013. Evaluation of electrofishing catch per unit effort for indexing fish abundance in Florida lakes. Transactions of the American Fisheries Society 142:247-256.
Allen, M. S., R. N. M. Ahrens, M. J. Hansen, R. Arlinghaus. 2013. Dynamic angling effort influences the value of minimum-length limits to prevent recruitment overfishing. Fisheries Ecology and Management 20:247-257.
Rogers, M. W., Allen, M. S. 2012. An ecosystem model for exploring lake restoration effects on fish communities and fisheris in Florida. Restoration Ecology 20:612-622.
Catalano, M.J.*, M.S. Allen. 2011. A whole-lake density reduction to assess compensatory responses of gizzard shad Dorosoma cepedianum. Canadian Journal of Fisheries and Aquatic Sciences 68:955-968.
Allen, M.S, M.W. Rogers, M.J. Catalano, D.G. Gwinn, S.J. Walsh. 2011. Evaluating the potential for stock size to limit recruitment in Largemouth Bass. Transactions of the American Fisheries Society 140:1093-1100.
Catalano, M.J.*, M.S. Allen. 2010. A size- and age-structured model to estimate fish recruitment, growth, mortality, and gear selectivity. Fisheries Research 105:38-45.
Rogers, M.R, M.S. Allen, P. Brown, T. Hunt, W. Fulton, and B. Ingram. 2010. A simulation model to explore the relative efficacy of stock enhancement versus harvest regulations for fishery sustainability. Ecological Modelling 221:919-926.
Gwinn, D. C., and M. S. Allen 2010. Exploring population-level effects of fishery closures during spawning: an example using nest-building largemouth bass. Transactions of the American Fisheries Society 139:626-634.
Rogers, M.W.*, and Allen, M.S. 2009. Exploring the generality of recruitment hypotheses for largemouth bass along a latitudinal gradient of Florida lakes. Transactions of the American Fisheries Society 138:23-37.
Allen, M. S., P. Brown, J. Douglas, W. Fulton, and M. Catalano*. 2009. An assessment of recreational fishery harvest policies for Murray cod in Southeast Australia. Fisheries Research 95:260-267.
Allen, M. S., R. M. Myers, and C. J. Walters. 2008. Temporal trends in largemouth bass mortality, with fisheries implications. North American Journal of Fisheries Management 26:108-118.
Rogers, M. W.*, and M. S. Allen. 2008. Hurricane impacts to Lake Okeechobee: altered hydrology creates difficult management trade offs. Fisheries 33(1)11-17.
Coggins, L. C. Jr., M. J. Catalano*, M. S. Allen, W. E. Pine, and C. J. Walters. 2007. Effects of cryptic mortality and the hidden costs of using length limits in fishery management. Fish and Fisheries 8:196-210.
Catalano, M.*, M. Allen, and D. Murie. 2006. Effects of variable flows on water chemistry gradients and fish communities in the Hillsborough River, Florida. North American Journal of Fisheries Management 26:108-118.
Rogers, M.W.*, M.S. Allen, and W.F.Porak. 2006. Seperating genetic and environmental influences on temporal spawning distributions of largemouth bass (Micropterus salmoides). Canadian Journal of Fisheries and Aquatic Sciences 63:2391-2399.
Bonvechio, T. F.*, and M. S. Allen. 2005. Relations between hydrologic variables and year-class strength of sportfish in eight Florida waterbodies. Hydrobiologia 532:193-207.
Bonvechio, T.F.*, M.S. Allen, R.L. Caitleux. 2005. Relative abundance, growth, and mortality of Suwannee Bass in four Florida rivers. North American Journal of Fisheries Management 25:275-283.
Rogers, M.W.*, M.S. Allen, and M.D. Jones. 2005. Relationship between river surface level and fish assemblage in the Ocklawaha River, Florida. River Research and Applications 21:501-511.
Dockendorf, K.J.*, and M.S. Allen. 2005. Age-0 black crappie abundance and size in relation to zooplankton density, stock abundance, and water clarity in three Florida rivers. Transactions of the American Fisheries Society 134:172-183.
Allen, M. S., M. Rogers*, R. Myers, and M. Bivins. 2004. Simulated impacts of tournament-associated mortality on largemouth bass fisheries. North American Journal of Fisheries Management 24:1252-1261.
Allen, M. S., K. I. Tugend*, and M. J. Mann. 2003. Largemouth bass abundance and angler catch rates following a habitat enhancement project at Lake Kissimmee, Florida. North American Journal of Fisheries Management 23:845-855.
Wheeler, A. P.*, and M. S. Allen. 2003. Habitat and diet partitioning between shoal bass and largemouth bass in the Chipola River, Florida. Transactions of the American Fisheries Society 132:438-449.
Allen, Micheal S. and Kimberly Tugend*. 2002. Effects of a large-scale habitat enhancement project on habitat quality for age-0 largemouth bass at Lake Kissimmee, Florida. Pages 265-276 in D.P. Philipp and M.S. Ridgeway, editors. Black Bass: ecology, conservation, and management. American Fisheries Society, Symposium 31, Bethesda, Maryland.
Allen, M. S.*, W. Sheaffer, W. F. Porak and S. Crawford. 2002. Growth and mortality of largemouth bass in Florida waters: implications for use of length limits. Pages 559-566 in D.P. Philipp and M.S. Ridgeway, editors. Black Bass: ecology, conservation, and management. American Fisheries Society, Symposium 31, Bethesda, Maryland.
Allen, Micheal S*., and Leandro E. Miranda. 2001. Quasi-cycles in crappie populations are forced by interactions among population characteristics and environment. Canadian Journal of Fisheries and Aquatic Sciences 58(3): 594-601.
Pine, William E. III*, and Micheal S. Allen. 2001. Differential growth and survival of weekly age-0 black crappie cohorts in a Florida lake. Transactions of the American Fisheries Society 130:80-91.
Pine, William E. III*, Micheal S. Allen, and Vicroria J. Dreitz. 2001. Population variability of the Gulf of Mexico Sturgeon: inferences from the capture-recapture and age-structure models. Transactions of the American Fisheries Society 130:1164-1174.
Allen, Micheal S. and William E. Pine III*. 2000. Detecting fish population responses to a minimum length limit: effects of variable recruitment and duration of evaluation. North American Journal of Fisheries Management 20:672-682.